Skip to main content

Table 3 Molecular docking data of the tested compounds in COX-2 active site

From: Combinative effects of akarkara root-derived metabolites on anti-inflammatory and anti-alzheimer key enzymes: integrating bioassay-guided fractionation, GC-MS analysis, and in silico studies

Compound

S (Kcal mol− 1)

Amino acids

Interacting groups

Type of interaction

Length

Oleamide (A1)

-11.7343

Ser339

Gln178

NH2

NH2

H-bond donor

H-bond donor

2.96

3.03

Stigmasterol (A2)

-14.6288

Ser516

OH

H-bond donor

2.61

Deca-2E,4E-dienoic acid 2-phenylethylamide (A3)

-11.4957

Leu338

Thr79

NH

Phenyl

H-bond donor

H-Pi interaction

2.91

3.86

Pellitorine (A4)

-10.8175

Ser516

C = O

H-bond acceptor

2.68

Celecoxib

-9.6345

Ser339

Leu338

Gln178

Arg499

NH2

NH2

NH2

SO2

H-bond donor H-bond donor

H-bond donor

H-bond acceptor

2.93

3.04

3.06

3.54