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Table 2 Differentially expressed up or downregulated proteins from male (a) and female (b) rat sera

From: Long-term evaluation of safety and biological effects of Korean Red Ginseng (Panax Ginseng): a long-term in vivo study

(a)

      

Description

UniProt ID

Gene

Location

Type(s)

Log2 FC

p - value

H2A clustered histone 6

Q4FZT6

H2AC6

Nucleus

other

1.436

0.008

Heterogeneous nuclear ribonucleoprotein C, isoform CRAa

A0A0G2JXW4

   

1.388

0.026

Ig-like domain-containing protein

D3ZEP5

   

1.201

0.023

Ig-like domain-containing protein

D3ZAB3

   

1.178

0.046

Secreted phosphoprotein 1

P08721

SPP1

ES

cytokine

1.139

0.006

Tsukushi, small leucine-rich proteoglycan

Q6QMY6

TSKU

ES

other

1.126

0.010

Ig kappa chain V-IV region-like

F1M1R0

LOC690813

Other

other

1.037

0.026

Urinary protein 2

P81828

   

1.027

0.017

Urinary protein 3-like

M0R7P3

   

1.002

0.001

Ig-like domain-containing protein

A0A0G2JXB7

   

1.001

0.005

Urinary protein 2

P81827

LOC100360095 (includes others)

Other

other

0.994

0.026

H1.2 linker histone, cluster member

A0A0G2K654

H1f2

Nucleus

other

0.984

0.032

Ig-like domain-containing protein

M0R7Q2

   

0.96

0.047

Cochlin

B1H259

Coch

Cytoplasm

other

0.94

0.008

Transcription factor binding to IGHM enhancer 3

D3ZAW6

TFE3

Nucleus

TR

0.869

0.015

Insulin-like growth factor-binding protein 6

P35572

IGFBP6

ES

other

0.835

0.018

Angiogenin

Q5GAM5

ANG

ES

enzyme

0.776

0.007

GM2 ganglioside activator

Q6IN37

GM2A

Cytoplasm

enzyme

0.772

0.023

CD5 molecule like

Q4KM75

CD5L

PM

Tm. Rc.

0.768

0.020

Similar to BC049975 protein

F1M8F5

   

-0.71

0.039

Mannosidase alpha class 1A member 1

A0A0G2JW29

MAN1A1

Cytoplasm

enzyme

-0.732

0.026

Uncharacterised protein

M0R5J4

   

-0.746

0.015

Filamin A

C0JPT7

FLNA

Cytoplasm

other

-0.754

0.016

NME/NM23 nucleoside diphosphate kinase 2

P19804

NME2

Nucleus

kinase

-0.76

0.026

Ig-like domain-containing protein

M0RDF2

   

-0.762

0.009

Paraoxonase 1

P55159

PON1

ES

phosphatase

-0.764

0.048

Serpin family D member 1

A0A0G2K8K3

SERPIND1

ES

other

-0.786

0.026

RIKEN cDNA 1300017J02 gene

E9PST1

1300017J02Rik

ES

other

-0.811

0.022

Cytochrome c, somatic

P62898

CYCS

Cytoplasm

transporter

-0.812

0.020

Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta

A0A0G2JV65

YWHAZ

Cytoplasm

enzyme

-0.818

0.027

Tropomyosin 3

Q63610

Tpm3

Cytoplasm

other

-0.821

0.034

Histidine-rich glycoprotein

A0A0G2K3G0

Hrg

Cytoplasm

other

-0.824

0.050

Serpin family A member 6

P31211

SERPINA6

ES

other

-0.837

0.033

Profilin 1

P62963

PFN1

Cytoplasm

other

-0.845

0.021

Integrin subunit beta 1

A0A0G2JSK5

ITGB1

PM

Tm. Rc.

-0.85

0.001

Serine protease 3

D3ZQV0

PRSS3

ES

peptidase

-0.852

0.002

Caveolae associated protein 2

Q66H98

CAVIN2

PM

other

-0.862

0.040

Cofilin 1

P45592

CFL1

Nucleus

other

-0.863

0.005

Carboxylesterase 1C

D3ZGK7

Ces1c

ES

enzyme

-0.866

0.027

Complement component 4 binding protein alpha

Q63514

C4BPA

ES

other

-0.878

0.003

Phosphoglycerate kinase 1

P16617

PGK1

Cytoplasm

kinase

-0.88

0.002

FYN binding protein 1

D3ZIE4

FYB1

Nucleus

other

-0.883

0.037

Tubulin beta class I

P69897

TUBB

Cytoplasm

other

-0.888

0.015

Thymosin beta 4 X-linked

P62329

TMSB10/TMSB4X

Cytoplasm

other

-0.907

0.047

Complement C1s

G3V7L3

C1S

ES

peptidase

-0.911

0.049

Alpha-1-B glycoprotein

Q9EPH1

A1BG

ES

other

-0.921

0.016

Carboxylesterase 1C

P10959

Ces1c

ES

enzyme

-0.951

0.043

Inter-alpha-trypsin inhibitor heavy chain 4

Q5EBC0

ITIH4

ES

other

-0.964

0.005

Serglycin

P04917

Srgn

Cytoplasm

other

-0.981

0.012

Cysteine- and glycine-rich protein 1

P47875

CSRP1

Nucleus

other

-0.984

0.022

Haemoglobin subunit beta-2-like

Q62669

LOC103694855

Other

other

-1.014

0.020

Glutathione peroxidase 3

A0A0G2K531

GPX3

ES

enzyme

-1.02

0.022

Thioredoxin

R4GNK3

TXN

Cytoplasm

enzyme

-1.034

0.003

Ig-like domain-containing protein

F1LWD0

   

-1.072

0.001

Pleckstrin

A0A0G2K393

PLEK

Cytoplasm

other

-1.119

0.003

Cyclase associated actin cytoskeleton regulatory protein 1

Q08163

CAP1

PM

other

-1.131

0.011

Phospholipid transfer protein

E9PSP1

PLTP

ES

enzyme

-1.151

0.047

Ceruloplasmin

G3V7K3

CP

ES

enzyme

-1.152

0.002

Tropomyosin 4

P09495

Tpm4

Cytoplasm

other

-1.153

0.003

Serpin family A member 10

Q62975

SERPINA10

ES

other

-1.178

0.001

Actin beta

A0A0G2K3K2

ACTB

Cytoplasm

other

-1.211

0.020

Tubulin beta 1 class VI

M0R8B6

TUBB1

Cytoplasm

other

-1.217

0.011

Transgelin 2

Q5XFX0

TAGLN2

Cytoplasm

other

-1.269

0.008

Carboxypeptidase N subunit 2

F1LQT4

CPN2

ES

peptidase

-1.297

0.004

Complement component 4 binding protein beta

A0A5C5

C4BPB

ES

other

-1.334

0.002

Ig-like domain-containing protein

F1LYQ4

   

-1.365

0.014

Calponin 2

D3ZRX9

CNN2

Cytoplasm

other

-1.389

0.017

Deleted in malignant brain tumours 1

Q8CIZ5

DMBT1

PM

Tm. Rc.

-1.435

0.025

Lactate dehydrogenase A

P04642

Ldha/RGD1562690

Cytoplasm

enzyme

-1.597

0.008

Tubulin alpha 4a

Q5XIF6

TUBA4A

Cytoplasm

other

-1.655

0.000

RAP1B, member of RAS oncogene family

Q62636

RAP1B

Cytoplasm

enzyme

-1.671

0.001

Complement C8 beta chain

P55314

C8B

ES

other

-1.743

0.013

Actin alpha 1, skeletal muscle

P68136

ACTA1

Cytoplasm

other

-2.257

0.011

H2A.Z variant histone 2

D4AEC0

H2AZ2

Nucleus

other

-2.287

0.003

(b)

      

Description

UniProt ID

Gene

Location

Type(s)

Log10 FC

p -value

Ig-like domain-containing protein

M0RD98

   

2.871

0.004

Ig-like domain-containing protein

M0RDL2

   

2.002

0.037

Ig-like domain-containing protein

M0R8G6

   

1.849

0.010

Ig-like domain-containing protein

F1LTY5

   

1.791

0.022

Ig-like domain-containing protein

F1M2W3

   

1.708

0.046

Immunoglobulin kappa constant

P01836

Igkc

ES

other

1.621

0.024

Ig-like domain-containing protein

D3ZWC1

   

1.591

0.029

Ig-like domain-containing protein

F1LW26

   

1.549

0.028

Ig-like domain-containing protein

D3ZEP5

   

1.521

0.036

Keratin 86

A0A0G2QC11

KRT86

Cytoplasm

other

1.301

0.012

Ig-like domain-containing protein

A0A0G2K7S9

   

1.194

0.044

Ig-like domain-containing protein

M0RBK4

   

1.16

0.032

Keratin 87

A7M746

Krt87

ES

other

1.154

0.045

Lipopolysaccharide binding protein

Q63313

LBP

PM

transporter

1.02

0.001

Insulin-like growth factor-binding protein 4

P21744

IGFBP4

ES

other

0.984

0.050

Glycoprotein V platelet

G3V9H9

NEWGENE_2724

Other

other

0.976

0.010

Transferrin

P12346

TF

ES

transporter

0.904

0.015

Carboxypeptidase B2

Q9EQV9

CPB2

ES

peptidase

0.719

0.049

Vinculin

A0A0G2K8V2

VCL

PM

enzyme

-0.901

0.045

Proteasome 20S subunit alpha 5

P34064

PSMA5

Cytoplasm

peptidase

-0.906

0.025

Heat shock protein family A (Hsp70) member 5

P06761

HSPA5

Cytoplasm

enzyme

-0.989

0.032

Proteasome 20S subunit beta 1

P18421

PSMB1

Cytoplasm

peptidase

-1.11

0.002

Coagulation factor X

Q63207

F10

ES

peptidase

-1.147

0.023

Filamin A

C0JPT7

FLNA

Cytoplasm

other

-1.266

0.018

Peroxiredoxin 5

Q9R063

PRDX5

Cytoplasm

enzyme

-1.449

0.050

Thymosin beta 4 X-linked

P62329

TMSB10/TMSB4X

Cytoplasm

other

-1.472

0.011

Ig-like domain-containing protein

F1LWW1

   

-1.515

0.039

Complement C8 beta chain

P55314

C8B

ES

other

-1.561

0.037

DExH-box helicase 9

D4A9D6

DHX9

Nucleus

enzyme

-1.655

0.040

ATP synthase F1 subunit beta

P10719

ATP5F1B

Cytoplasm

transporter

-1.731

0.032

Lactate dehydrogenase A

P04642

Ldha/RGD1562690

Cytoplasm

enzyme

-1.756

0.003

40S ribosomal protein S26

A0A0G2JY64

   

-1.831

0.017

Uncharacterised protein

D3ZM33

   

-1.839

0.026

Tropomyosin 4

P09495

Tpm4

Cytoplasm

other

-1.971

0.007

Ribosomal protein L15

P61314

RPL15

Cytoplasm

other

-2.041

0.013

Prohibitin

P67779

PHB

Nucleus

TR

-2.05

0.010

Ribosomal protein SA

P38983

RPSA

Cytoplasm

TR

-2.062

0.018

Ribosomal protein L18a

P62718

RPL18A

Cytoplasm

other

-2.065

0.026

X-ray repair cross-complementing 6

Q6AZ64

XRCC6

Nucleus

enzyme

-2.12

0.007

Eukaryotic translation initiation factor 4A1

Q6P3V8

EIF4A1

Cytoplasm

TR

-2.213

0.006

Chaperonin containing TCP1 subunit 2

Q5XIM9

CCT2

Cytoplasm

kinase

-2.231

0.025

Ubiquitin A-52 residue ribosomal protein fusion product 1

P62986

Uba52

Cytoplasm

other

-2.232

0.005

H3.3 histone A

P84245

H3-3A/H3-3B

Nucleus

other

-2.252

0.038

Receptor for activated C kinase 1

P63245

RACK1

Cytoplasm

enzyme

-2.326

0.009

Threonyl-tRNA synthetase 1

Q5XHY5

TARS1

Nucleus

enzyme

-2.661

0.012

  1. The intensities of proteins were calculated using the Proteome Discoverer software, and the annotation of protein cellular localisation was performed by the Ingenuity Pathway Analysis Log2FC: Log2 (fold change). ES, extracellular space; PM, plasma membrane; TR, transcription regulator; Tm Rc, transmembrane receptor