Microbial phyla and genera | 16 s rRNA Gene Primer Sequence 5′ – 3′ | Annealing Temperature (°C) | Reference |
---|---|---|---|
Firmicutes phylum | ATG TGG TTT AAT TCG AAG CA | 60 | [21] |
AGC TGA CGA CAA CCA TGC AC | |||
Lactobacillus genus | GAG GCA GCA GTA GGG AAT CTT C | 53 | [22] |
GGC CAG TTA CTA CCT CTA TCC TTC TTC | |||
Clostridium genus | GCA CAA GCA GTG GAG T | 50 | [23] |
CTT CCT CCG TTT TGT CAA | |||
Blautia genus | CGG TAC CTG ACT AAG AAG C | 55 | [24] |
AGT TTC ATT CTT GCG AAC G | |||
Enterococcus genus | CCC TTA TTG TTA GTT GCC ATC ATT | 61 | [24] |
ACT CGT TCT TCC CAT GT | |||
Bacteroidetes phylum | CAT GTG GTT TAA TTC GAT GAT | 60 | [21] |
AGC TGA CGA CAA CCA TGC AG | |||
Bacteroides genus | GAG AGG AAG GTC CCC CAC | 60 | [21] |
CGC TAC TTG GCT GGT TCA G | |||
Prevotella genus | GGT TCT GAG AGG AAG GTC CCC | 55 | [25] |
TCC TGC ACG CTA CTT GGC TG | |||
Actinobacteria phylum | CGC GGC CTA TCA GCT TGT TG | 57 | [26] |
CCG TAC TCC CCA GGC GGG G | |||
Bifidobacterium genus | CTC CTG GAA ACG GGT GG | 55 | [23] |
GGT GTT CTT CCC GAT ATC TAC A | |||
Proteobacteria phylum | CAT GAC GTT ACC CGC AGA AGA AG | 63 | [27] |
CTC TAC GAG ACT CAA GCT TGC | |||
Fusobacteria phylum | CCC TTC AGT GCC GCA GT | 51 | [27] |
GTC GCA GGA TGT CAA GAC | |||
Euryarchaeota phylum Methanobrevibacter genus | CCG GGT ATC TAA TCC GGT TC | 50 | [28] |
CTC CCA GGG TAG AGG TGA AA |