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Table 1 Primer sequences and annealing temperatures for selected analyzed microbial phyla and genera 16 s rRNA gene

From: Effect of the standard herbal preparation, STW5, treatment on dysbiosis induced by dextran sodium sulfate in experimental colitis

Microbial phyla and genera

16 s rRNA Gene Primer Sequence 5′ – 3′

Annealing Temperature (°C)

Reference

Firmicutes phylum

ATG TGG TTT AAT TCG AAG CA

60

[21]

AGC TGA CGA CAA CCA TGC AC

Lactobacillus genus

GAG GCA GCA GTA GGG AAT CTT C

53

[22]

GGC CAG TTA CTA CCT CTA TCC TTC TTC

Clostridium genus

GCA CAA GCA GTG GAG T

50

[23]

CTT CCT CCG TTT TGT CAA

Blautia genus

CGG TAC CTG ACT AAG AAG C

55

[24]

AGT TTC ATT CTT GCG AAC G

Enterococcus genus

CCC TTA TTG TTA GTT GCC ATC ATT

61

[24]

ACT CGT TCT TCC CAT GT

Bacteroidetes phylum

CAT GTG GTT TAA TTC GAT GAT

60

[21]

AGC TGA CGA CAA CCA TGC AG

Bacteroides genus

GAG AGG AAG GTC CCC CAC

60

[21]

CGC TAC TTG GCT GGT TCA G

Prevotella genus

GGT TCT GAG AGG AAG GTC CCC

55

[25]

TCC TGC ACG CTA CTT GGC TG

Actinobacteria phylum

CGC GGC CTA TCA GCT TGT TG

57

[26]

CCG TAC TCC CCA GGC GGG G

Bifidobacterium genus

CTC CTG GAA ACG GGT GG

55

[23]

GGT GTT CTT CCC GAT ATC TAC A

Proteobacteria phylum

CAT GAC GTT ACC CGC AGA AGA AG

63

[27]

CTC TAC GAG ACT CAA GCT TGC

Fusobacteria phylum

CCC TTC AGT GCC GCA GT

51

[27]

GTC GCA GGA TGT CAA GAC

Euryarchaeota phylum

Methanobrevibacter genus

CCG GGT ATC TAA TCC GGT TC

50

[28]

CTC CCA GGG TAG AGG TGA AA