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Table 1 The detailed list of significantly differential metabolites identified in EECR treatment groups in both MDA-MB-231 cell line and MDA-MB-468 cell line

From: Cell metabolomics to study the function mechanism of Cyperus rotundus L. on triple-negative breast cancer cells

ID

Compound Name

KEGG ID

M/Z

Real time

Adducts

ESI mode

Changes in MDA- MB-231 cells line

Changes in MDA- MB-468 cells line

RSD

Relatd pathway

1

L-Methionine S-oxide

C02989

165.0411

10.61

M(C13)-H[−]

neg

↑*

–

21.85%

Cysteine and methionine metabolism

2

Hexadecanoic acid

C00249

255.2333

12.09

M-H[−]

neg

↑*

–

10.12%

Fatty acid biosynthesis

3

Scopoletin

C01752

232.0595

2.10

M + ACN-H[−]

neg

↑**

–

6.35%

Phenylpropanoid biosynthesis

4

3,4-Dihydroxyphenyllactic acid

C01207

163.0392

8.39

M-H4O2 + H[1+]

pos

↑**

–

17.43%

/

5

O-Butanoylcarnitine

C02862

232.1547

3.47

M + H[1+]

pos

↑**

–

11.86%

/

6

4-Nitrophenol

C00870

138.0198

6.32

M-H[−]

neg

↑**

–

10.59%

Aminobenzoate degradation

7

Vaniline

C00755

151.0402

6.34

M-H[−]

neg

↑**

–

3.45%

Aminobenzoate degradation

8

L-Phenylalanine

C00079

164.0719

2.08

M-H[−]

neg

↑**

–

1.95%

Central carbon metabolism in cancer/ Phenylalanine metabolism

9

Octadecanoic acid

C01530

283.2645

13.31

M-H[−]

neg

↑**

–

7.83%

Fatty acid biosynthesis

10

3-Dehydrosphinganine

C02934

282.2793

11.58

M-H2O + H[1+]

pos

↑**

–

7.74%

Sphingolipid metabolism

11

2-Ethylhexyl phthalate

C03343

279.1593

13.43

M + H[1+],M-H[−]

pos/neg

↑**

↓

11.19%

/

12

L-Homocarnosine

C00884

195.1229

3.23

M-HCOOH+H[1+]

pos

↑**

↓

13.60%

Arginine and proline metabolism

13

Melatonin

C01598

269.0860

9.24

M + Cl37[−]

neg

↑**

↓

7.70%

Tryptophan metabolism

14

beta-D-Galactose

C00962

219.0267

0.78

M + K[1+]

pos

↓**

–

2.15%

/

15

beta-L-Aspartylhydroxamate

C03124

226.9662

1.60

M + Br[−]

neg

↓**

–

19.55%

/

16

Adenine

C00147

136.0620

1.24

M + H[1+]

pos

–

↑**

8.19%

Purine metabolism

17

Citric acid

C00158

191.0199

0.73

M-H[−],M + Na[+]

neg/pos

–

↑**

7.30%

Central carbon metabolism in cancer

18

L-Tyrosine

C00082

182.0813

1.03

M + H[1+]

pos

–

↑**

10.23%

Central carbon metabolism in cancer/Tyrosine metabolism

19

2-Phenylacetamide

C02505

136.0757

0.85

M + H[1+]

pos

–

↑**

8.61%

Phenylalanine metabolism

20

Riboflavin-5-phosphate

C00061

455.0977

4.15

M-H[−]

neg

–

↑**

3.88%

Riboflavin metabolism

21

Flavin adenine dinucleotide

C00016

784.1504

3.81

M-H[−]

neg

–

↑**

6.87%

Riboflavin metabolism

22

4-Hydroxybenzoate

C00156

137.0246

3.90

M-H[−]

neg

–

↓*

4.74%

Benzoate degradation

23

Methyl oleate

C03425

295.2647

12.80

M-H[−]

neg

–

↓**

16.74%

/

24

UDP-N-acetylglucosamine

C00043

606.0748

0.71

M-H[−]

neg

–

↓**

4.06%

Amino sugar and nucleotide sugar metabolism

25

S-Adenosylmethioninamine

C01137

355.1531

12.07

M[1+]

pos

–

↓**

11.94%

Cysteine and methionine metabolism/Arginine and proline metabolism

26

Adenosine

C00212

266.0900

2.90

M-H[−],M + Cl[−],M + H[1+]

neg/pos

–

↓**

8.66%

Purine metabolism

27

(R)-5-Phosphomevalonate

C01107

212.0202

8.39

M-NH3 + H[1+]

pos

↑*

↑**

3.13%

/

28

Hippurate

C01586

178.0512

3.42

M-H[−]

neg

↑**

↑*

12.38%

Phenylalanine metabolism

29

Glutathione

C00051

308.0911

1.24

M + H[1+]

pos

↑**

↑**

1.33%

Cysteine and methionine metabolism

30

Riboflavin

C00255

377.1459

4.19

M + H[1+]

pos

↑**

↑**

3.20%

Riboflavin metabolism

31

Androstanedione

C00674

307.2271

11.33

M + H2O + H[1+]

pos

↑**

↑**

5.41%

Steroid hormone biosynthesis

32

N-Acetyl-L-tyrosine ethyl ester

C01657

208.1336

9.03

M-CO2 + H[1+]

pos

↑**

↑**

6.26%

/

33

Geranylgeranyl diphosphate

C00353

383.2098

10.90

M-HCOONa+H[1+]

pos

↑**

↑**

2.17%

/

34

1-Palmitoylglycerophosphocholine

C04102

496.3401

10.36

M[1+]

pos

↑**

↑**

5.38%

/

35

L-Leucine

C00123

132.1019

0.89

M + H[1+]

pos

↑**

↑**

5.00%

Central carbon metabolism in cancer

36

L-alpha-Aminoadipate

C00956

116.0706

0.82

M-HCOOH+H[1+]

pos

↑**

↑**

1.56%

Lysine degradation

37

1-Methylnicotinamide

C02918

137.0710

0.79

M[1+]

pos

↑**

↑**

1.48%

Nicotinate and nicotinamide metabolism

38

(R)-4′-Phosphopantothenoyl-L-cysteine

C04352

335.1067

7.89

M-HCOONa+H[1+],M-HCOOH+H[1+]

pos

↑**

↑**

4.32%

Pantothenate and CoA biosynthesis

39

Inosine

C00294

249.0632

3.00

M-H2O-H[−]

neg

↑**

↑**

5.46%

Purine metabolism

40

Cytosine

C00380

146.9832

0.82

M + K-2H[−]

neg

↑**

↑**

3.88%

Pyrimidine metabolism

41

Indole-3-acetate

C00954

176.0710

7.89

M + H[1+]

pos

↑**

↑**

3.36%

Tryptophan metabolism

42

Pantothenate

C00864

202.1077

3.22

M-H2O + H[1+],M + H[1+]

pos

↑**

↓**

20.56%

Pantothenate and CoA biosynthesis

43

L-Carnitine

C00318

162.1125

0.80

M-H[−]

pos

↓**

↓**

2.31%

/

44

Choline phosphate

C00588

184.0734

0.79

M+

pos

↓**

↓**

4.06%

/

45

beta-D-Fructose

C02336

203.0527

0.80

M + Na[1+]

pos

↓**

↓**

3.18%

Amino sugar and nucleotide sugar metabolism

46

N-Acetylneuraminate

C00270

292.1031

3.52

M-H2O + H[1+]

pos

↓**

↓**

2.94%

Amino sugar and nucleotide sugar metabolism

47

D-Glucose

C00031

215.0330

0.80

M + Cl[−]

neg

↓**

↓**

4.13%

Central carbon metabolism in cancer

48

L-Glutamate

C00025

146.0460

0.74

M-H[−]

neg

↓**

↓**

2.67%

Central carbon metabolism in cancer

49

N-Succinyl-L,L-2,6-diaminopimelate

C04421

274.0926

3.52

M-NH3 + H[1+]

pos

↓**

↓**

3.37%

Lysine biosynthesis

  1. ↑ means that the level of the corresponding metabolite is higher in EECR treatment group compared to the control group; ↓ means that the level of the metabolite is lower in EECR treatment group compared to the control group. - indicates that no distinct change between the EECR treatment groups and the control group is found. / represents that the pathway what the metabolite participates in is unclear. *p < 0.05; **p < 0.01